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Image Search Results
Journal: Cell
Article Title: Structural basis for Cas9 off-target activity
doi: 10.1016/j.cell.2022.09.026
Figure Lengend Snippet: KEY RESOURCES TABLE
Article Snippet:
Techniques: Recombinant, DNA Extraction, Cell Isolation, Cell Culture, Ligation, Crystallization Assay, Software
Journal: Cell
Article Title: Structural basis for Cas9 off-target activity
doi: 10.1016/j.cell.2022.09.026
Figure Lengend Snippet: KEY RESOURCES TABLE
Article Snippet:
Techniques: Recombinant, DNA Extraction, Cell Isolation, Cell Culture, Ligation, Crystallization Assay, Software
Journal: Nature
Article Title: A disease-associated gene desert directs macrophage inflammation through ETS2
doi: 10.1038/s41586-024-07501-1
Figure Lengend Snippet: a . Cas9 gRNAs were designed to flank the chr21q22 enhancer region at the indicated sites. b . Representative bioanalyzer trace of PCR-amplified target region following monocyte CRISPR/Cas9 editing with an equimolar mix of RNPs containing 5′ and 3′ chr21q22 gRNAs. Example editing efficiency calculation shown. c . Editing efficiency at the chr21q22 locus. Mean enhancer deletion: 42.4% (n = 11). d . Location and sequence of gRNAs used to disrupt ETS2 . e . ETS2 editing efficiency. gRNA1 (mean), 89.7% (n = 31); gRNA2 (mean), 78.6% (n = 14). f . ETS2 expression (relative to NTC) following CRISPR/Cas9 editing, measured by qPCR (housekeeping gene PPIA ; equivalent results with other housekeeping genes; n = 10). g . Viability following monocyte nucleofection with Cas9 RNPs and macrophage differentiation. Mean values: NTC, 97.9%; gRNA1: 98.3%; gRNA2, 98.6% (n = 6). h . Expression of myeloid lineage markers following ETS2 editing and TPP differentiation (n = 5). Gating strategy shown in Supplementary Information Fig. . i . GSVA enrichment scores for 67 different monocyte/macrophage activation conditions to identify stimuli that phenocopy CD14+ monocytes/macrophages from IBD patients. j . Chromatin accessibility in ETS2-edited versus unedited inflammatory macrophages (n = 3). k . Enhancer activity (H3K27ac) in ETS2-edited versus unedited inflammatory macrophages (n = 3). P values calculated using edgeR (two-sided) in j , k . Red points denote adjusted P -value (P adj ) < 0.1, grey points NS. Error bars are mean±SEM in c , e - h . * P < 0.05. NTC: non-targeting control.
Article Snippet: Cas9–gRNA ribonucleoproteins were assembled as described previously and nucleofected into 5 × 10 6 monocytes in 100 μl nucleofection buffer (
Techniques: Amplification, CRISPR, Sequencing, Expressing, Activation Assay, Activity Assay, Control